WebSequence Similarity Search; Structure Similarity Search; Chemical Similarity Search; Chemical Sketch Tool; Browse by Annotations; New Entries; Unreleased Entries; PDB … WebA structure object similar to struct1, obtained by making a supercell, sorting, and translating struct2. get_supercell_matrix(supercell, struct) [source] Returns the matrix for transforming struct to supercell. This can be used for very distorted ‘supercells’ where the primitive cell is impossible to find.

A web-based three-dimensional protein retrieval system by matching …

WebHow MS2DeepScore predicts structural similarity from tandem mass spectra. MS2DeepScore can predict when compounds are closely related structural analogs, even when other comparison methods, like cosine similarity, may fail. Florian Huber and his team trained MS2DeepScore using over 100,000 spectra from over 15,000 unique compounds. stosh\u0027s kettle corn

Defining Structural Similarity* - Department of Psychology

WebScene classifiers, especially deep learning methods can exploit the structure or contextual information of image scenes and then improve the performance of LCZ classification. However, the square and uniform-sized image patches often bring about extra challenges, as they cannot exactly match LCZ entities of diverse sizes and shapes in most cases. WebNov 4, 2024 · TM-score (template modeling score) is a measure of topological similarity between the template and model structures (Xu and Zhang, 2010). The TM-score ranges between 0 and 1, where 1 indicates a perfect match … WebJul 8, 2024 · Here we present a novel method that can detect similarity between protein shapes and that works equally fast for any size of proteins or assemblies. The method looks at proteins as volumes of density distribution, departing from what is more usual in the field: similarity assessment based on atomic coordinates and chain connectivity. stosh workshop